Workshops

As part of the educational component of the NIH George M. O’Brien Center award, the Indiana Center for Biological Microscopy provides biennial workshops for renal investigators. The workshops provide formal training and hands-on experience with intravital kidney imaging.

Upcoming Webinars

Spatial Protein Imaging Workshop

May 20-21
10 a.m.-3:30 p.m. EST

State-of-the-art talks and discussions
Live interactive learning and demos, from imaging to neighborhood analysis and biological interpretation

Registration

Speakers

Andrea Radtke, Victor Puelles, John Hickey, Laura Barisoni, Jovan Tanevski, Seth Winfree, Chetan Poudel, Tarek Ashkar

Agenda

Day 1 — Imaging Foundations and Segmentation

Time	Session	Speakers
10-10:25 a.m.	Welcome and overview	Amanda Anderson, MD Professor of Medicine Vice Chair for Research University of Alabama at Birmingham Pierre Dagher, MD Professor of Medicine Director, O'Brien Center IU School of Medicine
10:30-11:10 a.m.	Overview: 2D/3D multiplexed kidney imaging and analytics	Tarek Ashkar, MD Professor of Medicine IU School of Medicine
11:15-11:55 a.m.	From methods to movements: The power of open science and shared knowledge in high dimensional tissue mapping	Andrea Radtke, PhD Market Segment Manager, Spatial Biology Leica Microsystems
12-12:40 p.m.	Applications of lightsheet microscopy and 3D morphology analysis in the kidney	Chetan Poudel, PhD Assistant Professor of Medicine and Pathology IU School of Medicine
12:40-1:30 p.m.	Break
1:30-2 p.m.	Segmentation primer	Seth Winfree, PhD Chief Scientific Officer QXD Diagnostics
2-3:30 p.m.	Hands-on workshop Image acquisition Image processing and segmentation Cell clustering and annotation	Connor Gulbronson, PhD Angela Sabo, PhD Mahla Asghari, PhD

Day 2 — Pathomics and Neighborhood Analysis

Time	Session	Speakers
10-10:10 a.m.	Day 2 introduction	NIDDK
10:15-10:55 a.m.	Multicellular neighborhood analysis across biological scales	John Hickey, PhD Assistant Professor of Biomedical Engineering Duke University
10:55-11:35 a.m.	Applications of pathomics	Laura Barisoni, MD Professor of Pathology Duke University
11:35 a.m.-12:15 p.m.	Pathology-oriented multiplexed paves the way for integrative disease mapping	Victor Puelles, MD, PhD Professor of Complex Tissue Analysis Aarhus University and University Medical Center Hamburg-Eppendorf
12:15-1 p.m.	Break
1-1:30 p.m.	Systematic discovery of neighborhoods and spatial relationships in complex tissues	Jovan Tanevski, PhD Lead Scientist at Heidleberg
1:30-3:30 p.m.	Hands-on workshop Neighborhood analysis Data visualization	Yang Miao Azuma Nanamatzu, MD, PhD Malgorzata Kamocka, PhD

Imaging data and codes will be provided before the webinar. Instructions to access will follow.